CDS

Accession Number TCMCG051C13693
gbkey CDS
Protein Id XP_024455272.1
Location join(8043255..8045571,8045657..8045774,8045881..8045962,8046652..8046754,8046876..8046972,8047674..8047776,8048980..8049102,8049385..8049432,8049521..8049618,8049720..8049785,8050472..8050631,8050782..8050889,8051287..8051336,8054205..8054239,8054357..8054418,8054490..8054651,8054746..8054834,8055216..8055315,8055898..8056206)
Gene LOC7477456
GeneID 7477456
Organism Populus trichocarpa

Protein

Length 1409aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024599504.1
Definition DNA ligase 6 isoform X2 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
R00382        [VIEW IN KEGG]
R10822        [VIEW IN KEGG]
R10823        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10747        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
6.5.1.6        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
6.5.1.7        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03030        [VIEW IN KEGG]
ko03410        [VIEW IN KEGG]
ko03420        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
map03030        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
map03420        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000012        [VIEW IN EMBL-EBI]
GO:0000726        [VIEW IN EMBL-EBI]
GO:0002237        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006271        [VIEW IN EMBL-EBI]
GO:0006273        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006304        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006979        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009411        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009845        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010225        [VIEW IN EMBL-EBI]
GO:0010243        [VIEW IN EMBL-EBI]
GO:0015074        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022616        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0035510        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044728        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070988        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080111        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090351        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901652        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1904975        [VIEW IN EMBL-EBI]
GO:2000683        [VIEW IN EMBL-EBI]
GO:2000685        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCCTTTCAATCCGATCACCAAACCCCACAGTCCATAAACTCACAAACCCTATACTACAAATCCCTCACTTCACTTTCCCTCCAAATCCCTCCAACCCCATCATCCTTCCTCCCTCTCCCTCCTTCTCTCCCTCCTTCAAAACTCATCCCCAAAACCCGTTTCCTCATCGACGGATTCCGCTTTTCCTCCCCTTCCATTACTGCCTACTTCCTCTCCCACTTCCATTCTGACCATTACACTGGTCTTTCCTCTCATTGGTCTCAAGGTATCATTTTTTGTTCCCCAATCACTACCTCTCTTGTTACTAGTATCCTTAATGTCCCTGAATGTTTTGTCTTTTCGCTTCCTCTGAATCGTGCTGTTGATATTGATGGTGTTGAAGTTAGTTTAGTTGATGCTAATCACTGTCCTGGCGCTGTTCAGTTCTTGTTGAAAGTGCCCATTTGTAAGAATTTAGATAATTTTGAGTTGTATGTTCATACTGGTGATTTTAGGTACTCTTGTGAGATGAAAGATGATGTTTTTTTGAGAGGTTTTGTGGGGTGTAATACGGTTTTTTTGGATACTACTTATTGTAATCCGAAATTTGTGTTTCCTTTACAAGAGGAGTCGGTTGATTATGTTGTTAGTGCGATTGAGAAGATAGGAGGAGAGGGGTTCAGTGGGGGTTTGGAGAAGAGGGTTCTGTTCCTCGTGGCTACTTATGTGGTGGGGAAAGAAAAGATTTTGATTGAGATTGCACGGAGGTGTAATAGGAAGGTCTATGTGGATGCCAGGAAAATGGAGGTTTTGAGGGTTTTGGGGTGCGGGGAGAGTGGGGTGTTTACAGAGGATGAGAATGAGAGTGATGTGCATGTTGTTGGCTGGAATGTCTTGGGGGAAACTTGGCCTTATTTTCGGCCGAATTTTGTGAAAATGAAGGAAATTATGGTGGAAAGAGGTTACAATAAGGTTGTGGGGTTTGTGCCAACTGGGTGGACATACGAAGTGAAACGTAATAAGTTTGCAGTGAGATCAAAGGATTCATGTGAGATTCATCTTGTGCCATATAGTGAGCATTCAAATTACAATGAACTCAGGGAGTATGTGAAGTTTTTGAGACCTAAACGTGTCATTCCTACTGTTGGTGTGGATGTTGAAAAACTCGATAGTAAACATGCTGCTAAAATGCAGAAGCATTTTGCTGGGTTAGTTGACGAGATGGCTAATAAGAAGGAATTTTTAATGGGTTTTCTTCGTGGGTCGTCTGAGAATGATAAGAAGGTTGAAATGGATGCTGTCTCAGGCTTGAACGAGGGGCTGGCGCAGGAGAAAGAGTTAGTGGAGTCAGTTGAAATGAAAGCCCATGAGAATAATGACACTGTTGCTTGTCTCAACTCCTCATCTATACTGCAAGAATCTCCTACACACAATTTAAGCATGCTAAATGATGAGGAAAGAGATAAACTCGTTCATGAATTGAGTGATTGTTTGCCCACATGGGTTACCCGAGACCAAATGTTAGATTTAATCAGCACTCATGGGAGGAATATTGTTGAAGCAGTTTCTAGCTTTTATGAACGTGAAATGGAATTCCATGATCAAGTAATTTCTTGTAGAGTAACTGTTTCTTCATCTGAGACAGTTCCATTATATGACTCTGAATCACCTTCAAAACCAGCTTCTATTAATACTGATAGTCGAAGTATGGGTTTTCTGTCAGGTCAAAACTACAAGTCACCTAGCAAGAATCCTAAACTAAAGGGTGGTAATTCTCCTGGAAAAAGGAAGAGGAGCGTTGGCAATAAGCCTGGCAAGAAATCAAAAATTAATTCAAAGCTGGAATCTGGCTTGTCGAAGCAATCCACCATTACTAAGTTTTTCAATAAAGTTTTGCCTGATGCTTCTCAAGTTAGTGTGGTTGCATCTATATCTGAGCAATGCCCTGGAGATGAAAATTTGTTGCAAAATGATGATGTTACAGAGTCATACAGGGAGGAGGTAGATCAGTTTATTCAGATAATTGATGGCAATGAGTCAACAAGAAGTTATGCTGCCACCATCCTCAAGAAGACAGAAGGAGATATTAACAAGGCTCTGGACATGCATTATGGTGATCCCATGGGTAACCTTGGCAAGAGTATAGAGGCTTTGGTGGTTTCTGGCAATATGGTTGAGCGCCAGTGCGAAACTGGCTCCTCTTCTGCCAGGGAGAAAGAATTGTTTGGAGAAATAGAAAATATGGTTGATCTATCCGTTCAGGGATCATTAATAAAAAACGTGGATGCAACTCTTGTATCACTACCAACAGAAAAATATAATCCCATAGAGCATGCATGCTGGAATGGTGGACAACCTGCACCATATATCCATCTTGCACGTGCTTTTGACCTGGTCGAGGCAGAAAAAGGAAAGATCAAAGTTACTTCGTTATTGTGCAATATGTTTAGAAGTTTGCTGGCATTGTCTCCTGAGGATGTGCTGCCTGCTGCCTATCTGTGCACAAATAAGATTGCTGCTGACCATGAAAATGTGGAACTAAACATAGGTGGAACCTTGGTTACATCGGCTTTGGAAGAGGCATGTGGAACAAACCGGTCTAAAATAAGGGAAATGTACAATAGTATGGGGGATCTTGGTGACGTTGCTCAAGTATGCCGACAAACACAGACATTACTGGCTCCTCCTCCTCCCCTTCTTATTAAAGATGTATTTTCTGCGCTGCAGAAGATAAGTGTACAAACAGGTAGTGGAAGTACTGGTCGAAAGAAGAGCCTCATTGTGAATCTTATGCGTTCTTGTAGGGAGAAGGAGATGAAGTTTATTGTCAGAACTTTGGTAAGGAATTTACGGATTGGAGCAATGATGAGAACTATCCTACCTGCTTTAGCTCAAGCTGTTGCTTTGAATTCCTTTTCTTCTGATGAATGTAAAGCTGAGAATGTGAAGGAGAAACTTCAGTACATTTCCACAGCAGTGGTTGAAGCTTATAACATCCTTCCTACTCTGGATTTGGTTGTTCCTTCACTCATAAATGAAGGCGTTGGATTTTCATCGTCAACTTTATCAATGGTTGCTGGGATACCTCTTAAACCAATGCTTGCAAAAATTACAAATGGAGTTGCTCAAGTACTAAAGCTCTTTGAAAATAAAGCTTTTACATGTGAATACAAATACGATGGTCAGCGTGCCCAAATTCACAAAATGCCAAATGGCACTGTACGTATCTATTCACGAAATGGGGATGAAACAACTTCTAGGTTTCCTGATTTGATCAAGATAATTGAGGAATCTTGTAAACCTGCTGCAGCGACTTTAATAGTGGATGCAGAGGTAGTTGCAGTTGATAGAAAGAATGGCTGCAAGCTCATGTCCTTTCAAGAGCTATCTTCAAGGGAGAGAGGGAGCAAAGATTCTTCCATTGCTGTGAATAAGATAAAGGTTGATATATGCGTGTTTGTCTTTGATATCATGTTTGCTAATGGAGAACAGCTGTTGGAGCTTCCTCTCCGCCAAAGGCGACAATACTTGAAAGACTTGTTTTGTGATGAGAGATTAGGTTGTTTTGAATATGCGAAGGAGATGACGGTTGAAGCACAGGATGCTTGTTTGACCAATGATGCAACTTTGACCAAGATGAAATCTTTCCTTGAAGATGCATTGCGGTCCTCGTGTGAAGGGATTATGGTGAAATCTCTAGATATCGATGCTGGATACTGTCCATCAAAACGGACTGACGCATGGTTAAAGGTCAAGAAGGATTATGTTGAAGGACTGAATGATTCTCTTGATTTAGTCCCGATTGGTGCTTGGCATGGAAATGGGAGAAAAGCAGGATGGTATAGTCCATTCCTCATGGCATGCTACAACCCTGAGACTGAGGAATTCCAAAGTGTGTGCCGTGTCATGTCTGGGTTCTCAGATGCTTTTTATATAGAGATGAAAGAATTCTTCTCTGGAGATAGGATCTTGGCCAAAAAGCCACCATACTATCGAACTGTGGAGGCGCCGGATATGTGGTTTTCTCCAGAAGTTGTTTGGGAAATAAGAGGTGCTGACTTTACAATTTCACCTGTTCACCAGGCTGCTGTAGGTTTAGTTCATCAATCTCGTGGCATCTCAATCAGATTTCCAAGATTTATTCACTCCATATCGGATAGAAATCCAGAGGAATGTAGCACAGCAGCAGATATAGCTGAAATGTTTAATTCTCAAACAAGGAAGATGGACGTGACAGCTGAAAGATGA
Protein:  
MAFQSDHQTPQSINSQTLYYKSLTSLSLQIPPTPSSFLPLPPSLPPSKLIPKTRFLIDGFRFSSPSITAYFLSHFHSDHYTGLSSHWSQGIIFCSPITTSLVTSILNVPECFVFSLPLNRAVDIDGVEVSLVDANHCPGAVQFLLKVPICKNLDNFELYVHTGDFRYSCEMKDDVFLRGFVGCNTVFLDTTYCNPKFVFPLQEESVDYVVSAIEKIGGEGFSGGLEKRVLFLVATYVVGKEKILIEIARRCNRKVYVDARKMEVLRVLGCGESGVFTEDENESDVHVVGWNVLGETWPYFRPNFVKMKEIMVERGYNKVVGFVPTGWTYEVKRNKFAVRSKDSCEIHLVPYSEHSNYNELREYVKFLRPKRVIPTVGVDVEKLDSKHAAKMQKHFAGLVDEMANKKEFLMGFLRGSSENDKKVEMDAVSGLNEGLAQEKELVESVEMKAHENNDTVACLNSSSILQESPTHNLSMLNDEERDKLVHELSDCLPTWVTRDQMLDLISTHGRNIVEAVSSFYEREMEFHDQVISCRVTVSSSETVPLYDSESPSKPASINTDSRSMGFLSGQNYKSPSKNPKLKGGNSPGKRKRSVGNKPGKKSKINSKLESGLSKQSTITKFFNKVLPDASQVSVVASISEQCPGDENLLQNDDVTESYREEVDQFIQIIDGNESTRSYAATILKKTEGDINKALDMHYGDPMGNLGKSIEALVVSGNMVERQCETGSSSAREKELFGEIENMVDLSVQGSLIKNVDATLVSLPTEKYNPIEHACWNGGQPAPYIHLARAFDLVEAEKGKIKVTSLLCNMFRSLLALSPEDVLPAAYLCTNKIAADHENVELNIGGTLVTSALEEACGTNRSKIREMYNSMGDLGDVAQVCRQTQTLLAPPPPLLIKDVFSALQKISVQTGSGSTGRKKSLIVNLMRSCREKEMKFIVRTLVRNLRIGAMMRTILPALAQAVALNSFSSDECKAENVKEKLQYISTAVVEAYNILPTLDLVVPSLINEGVGFSSSTLSMVAGIPLKPMLAKITNGVAQVLKLFENKAFTCEYKYDGQRAQIHKMPNGTVRIYSRNGDETTSRFPDLIKIIEESCKPAAATLIVDAEVVAVDRKNGCKLMSFQELSSRERGSKDSSIAVNKIKVDICVFVFDIMFANGEQLLELPLRQRRQYLKDLFCDERLGCFEYAKEMTVEAQDACLTNDATLTKMKSFLEDALRSSCEGIMVKSLDIDAGYCPSKRTDAWLKVKKDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDAFYIEMKEFFSGDRILAKKPPYYRTVEAPDMWFSPEVVWEIRGADFTISPVHQAAVGLVHQSRGISIRFPRFIHSISDRNPEECSTAADIAEMFNSQTRKMDVTAER